PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021065t2
Common NameTCM_021065
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 561aa    MW: 64204.6 Da    PI: 9.1522
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021065t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.43.6e-2166141190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY +YA +vGF++r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw +++++++HnHel 
  Thecc1EG021065t2  66 EFYGQYAIRVGFKIRTGQLYRSRTDGSVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWLIDQIQKDHNHELG 141
                       6***************************************876..............589****************************95 PP
2FAR164.92.1e-20221294289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +Y++YA+ +GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a +++k++++g+w v++l+++HnH+l
  Thecc1EG021065t2 221 YYQAYAEGAGFRVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAYMRIKRKDSGTWIVDRLHKDHNHDL 294
                       8**************************************999..............4899**************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-1766141IPR004330FAR1 DNA binding domain
PfamPF031013.8E-16221294IPR004330FAR1 DNA binding domain
PfamPF105511.4E-29394487IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
QATSQISKGS SDINANSGEC VNAMFVKAYP VGMVHMLNNG NVEDEGESRM EPYVGLEFDS  60
ADEAREFYGQ YAIRVGFKIR TGQLYRSRTD GSVSSRRFVC SKEGFQLNSR TGCPAFIRVQ  120
RRDSGKWLID QIQKDHNHEL GPVGESHSPI LQQTPPVVTK SLVEVLRRPK VKLLEEIDNG  180
GLIPSGIINF KRHKRGGDGG QSIAEPYTGL EFNSANEAYG YYQAYAEGAG FRVRIGQLFR  240
SKNDGSITSR RFVCSKEGFQ HPSRVGCGAY MRIKRKDSGT WIVDRLHKDH NHDLEVHAVY  300
QRKFSTASKK LLEEEAGGLA SMDLVEVNNG KLVKRRQENK IGAEWYSVLF EYFQTRQAED  360
TGFFYSVDVD NGSCMSVFWA DGRSRFSCSQ FGDVIVFDAS YRKNNYVVPF ATFVGVNHHK  420
QPVLLGSALI ANESKESFTW LFQTWFRAMS RCHPKSIIAD QDMAIQQAIA KVFPGTHHRF  480
SLWQIRAKER ENFRSMPNEF RYEYEKCVYQ SQTTVEFNTT WNLLITKYCL RENIWLKHMY  540
EKRESWVPLY LRGKFFAGIP I
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035352.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A061EVI70.0A0A061EVI7_THECC; FAR1-related sequence 7 isoform 2 (Fragment)
STRINGEOY062780.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  3. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]