PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG020030t3 | ||||||||
Common Name | TCM_020030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 195aa MW: 22217.1 Da PI: 7.5827 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.9 | 5.4e-26 | 88 | 178 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ ++++ + + tr gC+a++++ +++ +kw+vtk+++ HnH+l+ Thecc1EG020030t3 88 EFYAAYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYIYRKDR-VlpPPPITREGCQAMIRLALRDGAKWVVTKFVKGHNHKLM 178 6******************************************99883332.234899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-23 | 88 | 178 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MFQCFLQSTI GSMMDNQSSL EFDSDESDLD VRAEEHGQME DVLQKNLDFC VSEDEKLAEQ 60 SGGSLSHITD ALEPYMGMEF NSRDEAREFY AAYGRRTGFT VRIHHNRRSR VNNQVIGQDF 120 VCSKEGFRAK KYIYRKDRVL PPPPITREGC QAMIRLALRD GAKWVVTKFV KGHNHKLMSP 180 NKVPLRESGK HLVG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021291085.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Refseq | XP_021291086.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 6-like isoform X2 | ||||
TrEMBL | A0A061EJ25 | 1e-145 | A0A061EJ25_THECC; Far-red impaired responsive family protein isoform 1 | ||||
TrEMBL | A0A061EKE1 | 1e-145 | A0A061EKE1_THECC; Far-red impaired responsive family protein isoform 2 | ||||
STRING | EOY04861 | 1e-146 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 7e-27 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG020030t3 |
Entrez Gene | 18602479 |
Publications ? help Back to Top | |||
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