PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016161t1

Common Name

TCM_016161

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

TCP

Protein Properties

Length: 391aa MW: 41063 Da PI: 8.8716

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016161t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.4	8.6e-37	90	198	2	101
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaes 77 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt ++ssa Thecc1EG016161t1 90 TAKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTgtvpaiavsvggtlkipTTSSA------- 175 6899************************************************************4444444444444333222222....... PP TCP 78 ssssasnsssgkaaksaakskksq 101 + s++n+s+++++ ++ +kk++ Thecc1EG016161t1 176 -NTSNNNNSNNNKQIDDGATKKRK 198 .22222222222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-30	95	198	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.003	96	150	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MDPDDDGGTS DLSTSAGEPN TATATTANNK NNDKNCENSA FPVMPLKEEP TETDPDRKTH 60 PSPPVGVVPV AMQIQQMPMQ IPAMPMPVTT AKRSSTKDRH TKVEGRGRRI RIPATCAARI 120 FQLTRELGHK SDGETVRWLL EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP TTSSANTSNN 180 NNSNNNKQID DGATKKRKRP ANSEFCDISD GIPFAVSQNQ QQLVTQASGL APVTPQGVVP 240 VWAVGNTGMM VPANAFWMIP QPAATAAGNG LTNQQPSPQI WTLSPSLTPV FNVAARPISS 300 FVATTNQVQA VVGNGLSTLA VNTSSTAVGA TVSKKSTMAP SVSSGGSGSG STGGKPQLLR 360 DFSLEIYDKQ ELQFMGRSGN HHQQMQASKQ *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MDPDDDGGTS DLSTSAGEPN TATATTANNK NNDKNCENSA FPVMPLKEEP TETDPDRKTH  60
PSPPVGVVPV AMQIQQMPMQ IPAMPMPVTT AKRSSTKDRH TKVEGRGRRI RIPATCAARI  120
FQLTRELGHK SDGETVRWLL EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP TTSSANTSNN  180
NNSNNNKQID DGATKKRKRP ANSEFCDISD GIPFAVSQNQ QQLVTQASGL APVTPQGVVP  240
VWAVGNTGMM VPANAFWMIP QPAATAAGNG LTNQQPSPQI WTLSPSLTPV FNVAARPISS  300
FVATTNQVQA VVGNGLSTLA VNTSSTAVGA TVSKKSTMAP SVSSGGSGSG STGGKPQLLR  360
DFSLEIYDKQ ELQFMGRSGN HHQQMQASKQ *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040099.2	0.0	PREDICTED: transcription factor TCP9
Swissprot	O64647	5e-67	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A061G412	0.0	A0A061G412_THECC; TCP family transcription factor, putative
STRING	EOY24600	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17337	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	9e-65	TCP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG016161t1
Entrez Gene	18606436

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]