PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG016161t1 | ||||||||
Common Name | TCM_016161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 391aa MW: 41063 Da PI: 8.8716 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.4 | 8.6e-37 | 90 | 198 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaes 77 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt ++ssa Thecc1EG016161t1 90 TAKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTgtvpaiavsvggtlkipTTSSA------- 175 6899************************************************************4444444444444333222222....... PP TCP 78 ssssasnsssgkaaksaakskksq 101 + s++n+s+++++ ++ +kk++ Thecc1EG016161t1 176 -NTSNNNNSNNNKQIDDGATKKRK 198 .22222222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-30 | 95 | 198 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.003 | 96 | 150 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
MDPDDDGGTS DLSTSAGEPN TATATTANNK NNDKNCENSA FPVMPLKEEP TETDPDRKTH 60 PSPPVGVVPV AMQIQQMPMQ IPAMPMPVTT AKRSSTKDRH TKVEGRGRRI RIPATCAARI 120 FQLTRELGHK SDGETVRWLL EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP TTSSANTSNN 180 NNSNNNKQID DGATKKRKRP ANSEFCDISD GIPFAVSQNQ QQLVTQASGL APVTPQGVVP 240 VWAVGNTGMM VPANAFWMIP QPAATAAGNG LTNQQPSPQI WTLSPSLTPV FNVAARPISS 300 FVATTNQVQA VVGNGLSTLA VNTSSTAVGA TVSKKSTMAP SVSSGGSGSG STGGKPQLLR 360 DFSLEIYDKQ ELQFMGRSGN HHQQMQASKQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007040099.2 | 0.0 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 5e-67 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A061G412 | 0.0 | A0A061G412_THECC; TCP family transcription factor, putative | ||||
STRING | EOY24600 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17337 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45680.1 | 9e-65 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG016161t1 |
Entrez Gene | 18606436 |
Publications ? help Back to Top | |||
---|---|---|---|
|