PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011145t1
Common NameTCM_011145
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 621aa    MW: 66551 Da    PI: 9.1438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011145t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0597119123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ C+k F r  nL+ H r H
  Thecc1EG011145t1  97 FICEVCNKGFQREQNLQLHRRGH 119
                       89*******************88 PP
2zf-C2H2130.0003173195123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H +t+
  Thecc1EG011145t1 173 WKCEKCSKRYAVQSDWKAHSKTC 195
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.05E-796119No hitNo description
Gene3DG3DSA:3.30.160.607.0E-696119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005297119IPR015880Zinc finger, C2H2-like
PfamPF121713.1E-597119IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9997119IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM00355130138168IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-5161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-7168193No hitNo description
SMARTSM00355130173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MAAASSSTPF FGTREENQTQ MIQQQSSSTP TSSTAPTTAP QKKKRNQPGT PSNLGFYFVS  60
PPIFLIIFRL ALFLDEADPD AEVIALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN  120
LPWKLRQKTT KEVKRKVYLC PEPTCVHHDP SRALGDLTGI KKHYSRKHGE KKWKCEKCSK  180
RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR HPTNLSTMGS  240
HLFGSNHMSL GLSQVGSQIP SLQDQNQPPS NMLRLGSAGA AKFEHLIPPS NPSPLQNMPT  300
SAFFMPDANQ GFHHQDHQSH HGHGPFLNKP LHGLMQLPDL QGNTNNTPAS TNLFNLGFFP  360
NNSAASSIST SENASASTAN LPNSGFLSPN QFNSGNGGGG GQGTAMFSTN MGDQVGSGLS  420
SLYSTSMQHE NISPHMSATA LLQKAAQMGS TTSNNTSSLL RGLGSSSASG SKSDRPVLSA  480
NFGSNYGGGG GETLRSQMEN DSNLQGLMNS LANGNSSIFG AGHGQDSNFG GFSGSGMTLD  540
QQSNNANFCN VNEAKLHQNL AASIGGTDKL TLDFLGVGGM VRNMGGGFSQ REQHGINISS  600
LDPEVKSAQA NQQFGSAKLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35169230364Zinc finger protein JACKDAW
5b3h_F5e-35169230364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084941e-142AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045367.20.0PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_007045368.20.0PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_007045369.20.0PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_007045370.20.0PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_021293341.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_021293342.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-137IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A061E9C50.0A0A061E9C5_THECC; Indeterminate(ID)-domain 5, putative isoform 1
STRINGEOY011980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-127indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]