PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG007220t1 | ||||||||
Common Name | TCM_007220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 38796.6 Da PI: 4.6619 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.3e-10 | 282 | 322 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Thecc1EG007220t1 282 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 322 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-14 | 274 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-12 | 277 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.16E-12 | 281 | 326 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 282 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MDSMGAAILE GEWSSLSGTY TTEEADFMAQ LLSNCPLPNE LDGSSNLGIP STYWPGHHST 60 ISMKAASYCS SDIADTSSYS FSQGSSYSAG SSIVFPSSSQ ESYYLSDSHP IFVANNSPMS 120 MDFCMEDATN TSSYLVEGDD CLNQEMGNGN VEQAGKSHQE PALPNKNLEP KRESEIPQPE 180 PVTEIKSNNI SENSKKRSRS SGDVQKNRQN ARSKKNQGSA STTNNDKDGN AGLNGQSSAS 240 CSSDDDSNAS QELNGGQAAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP 300 NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDL KVATPKRS* |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042632.2 | 0.0 | PREDICTED: transcription factor bHLH84 | ||||
Swissprot | Q84WK0 | 9e-76 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | A0A061E855 | 0.0 | A0A061E855_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative | ||||
STRING | EOX98463 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2834 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33880.1 | 5e-55 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG007220t1 |
Entrez Gene | 18608080 |
Publications ? help Back to Top | |||
---|---|---|---|
|