PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006325t1 | ||||||||
Common Name | TCM_006325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24228.1 Da PI: 5.2589 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.4 | 3.9e-23 | 15 | 58 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++s rqvtfskRrng++KKA+EL+vLC+a++ +i+fs++gk Thecc1EG006325t1 15 KLEDESSRQVTFSKRRNGLFKKASELCVLCGANIGIIVFSPKGK 58 6799***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-34 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.464 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-29 | 7 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.98E-39 | 7 | 78 | No hit | No description |
PRINTS | PR00404 | 2.6E-21 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-25 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-21 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-21 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAKATRGRQK IQIKKLEDES SRQVTFSKRR NGLFKKASEL CVLCGANIGI IVFSPKGKPF 60 CFGHPNVDAV VDRYLSGNPT LHGEEDSETS CDGTPCFEEF DEECKEAMEK LEEEKRRSKE 120 IEKEKEERKK KGQFWWDEPI DNMGVEELEA YVKAMEELRK NVARRANELM GDVFAAATVA 180 NSGGLGTGFA DQNGGFGYGD DAFHFGHGHG LGFGGGQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 1e-16 | 7 | 78 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 1e-16 | 7 | 78 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 1e-16 | 7 | 78 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 1e-16 | 7 | 78 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-16 | 7 | 78 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-16 | 7 | 78 | 2 | 73 | MEF2C |
5f28_B | 2e-16 | 7 | 78 | 2 | 73 | MEF2C |
5f28_C | 2e-16 | 7 | 78 | 2 | 73 | MEF2C |
5f28_D | 2e-16 | 7 | 78 | 2 | 73 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 130 | KRRSKEIEKEKEERKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021300301.1 | 1e-137 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A061DX51 | 1e-159 | A0A061DX51_THECC; Mads box protein, putative | ||||
STRING | EOX97245 | 1e-159 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-38 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006325t1 |
Entrez Gene | 18607277 |
Publications ? help Back to Top | |||
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