PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004222t2
Common NameTCM_004222
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 456aa    MW: 48800 Da    PI: 5.6464
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004222t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1408.8e-13218274358
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeNkaLkkeleelkkevak 58 
                       + kr+rr+ +NRe+ArrsR+RK+a +  Le   v +L  e ++L k+l  ++ ++++
  Thecc1EG004222t2 218 DAKRARRMRSNRESARRSRRRKQAHMNDLEAqVVGQLRVEHSTLLKRLTDMNHKYDE 274
                       68***************************961578**********888877776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-8215271No hitNo description
SMARTSM003382.8E-15216281IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128218250IPR004827Basic-leucine zipper domain
PfamPF001702.1E-10219273IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.62E-8220270No hitNo description
PROSITE patternPS000360223238IPR004827Basic-leucine zipper domain
PfamPF124987.0E-31288407IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNTVFSVDDF SDPFWATPAL EAAAGMSRSQ SEWALQKFLE EFSGAGGATP GSRAGENVIG  60
PCLAAPQPSV SKAEEGDGDS DVVEIKRSNN QNHHPPPSDP TPTVPIDSDE YREILKNKLD  120
QACAAVALSR ASAVKAEDSS AQAEDRALQS GSQVQGSSKA QGQGEPDDAP CGTQAVLTTQ  180
RKSGVQARQT TSGSSREDSD DDELEGDTET TENMDPADAK RARRMRSNRE SARRSRRRKQ  240
AHMNDLEAQV VGQLRVEHST LLKRLTDMNH KYDEAAVDNR ILKADIETLR AKVKMAEETV  300
KRVTGINPVL LSRPNVPSVG MPFVSSPLEA STAAPVPLQP NTNQFFQQPV PSIAAPMHHQ  360
GVDNSFRGNT PVPPIVNPQT EVGVNNVNET SALQHTPSLE RVQDQIAHSG MQKQIGPGVS  420
PCGSMPGWEP GLAHAAAKNW EPGLAHAAAK NKKQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232239RRSRRRKQ
2234239SRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050435.10.0PREDICTED: light-inducible protein CPRF2
TrEMBLA0A061DX580.0A0A061DX58_THECC; BZIP transcription factor family protein, putative isoform 2
STRINGEOX945930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02640.22e-50bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]