PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001827t1 | ||||||||
Common Name | TCM_001827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 45485.6 Da PI: 7.5983 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.4e-06 | 69 | 90 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+Cgk Fs+ L Hir+H Thecc1EG001827t1 69 SCPYCGKKFSSGQALGGHIRMH 90 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00076 | 116 | 137 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+++F++ ++L H+r+H Thecc1EG001827t1 116 TCFICKERFPSIMSLCGHMRNH 137 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.261 | 68 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.045 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.4E-8 | 68 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.3E-5 | 69 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.42E-6 | 69 | 97 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-4 | 117 | 139 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MEINRVEDEF SDKKSSENEN ERQRTVRDDD NDHGASSSDS LMERQRPNRR KFRWREKNVS 60 NGAEGQVRSC PYCGKKFSSG QALGGHIRMH EKPKAYKSVP KVLSTVTDKK EKGDNTCFIC 120 KERFPSIMSL CGHMRNHPER DWKGIRPPNS DETTPEPDTR LQQQEPAKNL PNCISNWSVT 180 GKRGRKASIK DKLAINRVPE KKRKLRNSED GNQSKFPRQE LKTEKAASIL EEEDILEKDL 240 PEEGEIIEEE LNIRKVDDGS SISEDVLTNS FSTFQALGIQ RVSHGKINDF DHLGELAFSD 300 ATIVDKKHRE ASSSGSNVGK SKKIARHGKT YQARSNHKIC LQMETADNPL SRITSQEEAK 360 EVGFRGEPAG ESGFDHKASL SPEAIQAGTA KMLDFDLNLP HEE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048813.2 | 0.0 | PREDICTED: uncharacterized protein LOC18612131 | ||||
TrEMBL | A0A061DK00 | 0.0 | A0A061DK00_THECC; Uncharacterized protein | ||||
STRING | EOX92970 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001827t1 |
Entrez Gene | 18612131 |
Publications ? help Back to Top | |||
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