PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34466-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 308aa    MW: 33543.8 Da    PI: 6.0418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34466-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.57.4e-081150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ++n+s r  t+  R + +  KA E+S++C+a+++v+++ +
  TRIUR3_34466-P1 11 VDNESSRRRTLETRGKNLASKAGEVSIMCNAKACVLVYDE 50
                     68999********************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.381152IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-10160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-13289IPR002100Transcription factor, MADS-box
CDDcd002664.06E-15261No hitNo description
PfamPF003191.0E-51152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRKKIAIEY VDNESSRRRT LETRGKNLAS KAGEVSIMCN AKACVLVYDE GNAAPKVYPS  60
HADAVDILNQ CKNMPEGQLK KAVNQEDFLT QRLNKLQVKE NIVRDPEIRI LLHKAMLGSD  120
LPDLKVDEIT NVSSRLEEIL ERMGDSIAKF SGKPPVLQPQ APYVPDNMDM GSSATYQASS  180
LAPHVPKNMD MGSQVMNQAP SSTPYVTGNM HMGSPMMYHV PLLHEGWLET VRSGRDLDAL  240
VHNGYSTNRH DGAYTSTGVG YSTNGHDGAG TSANDGSSGG MKPFDVGFGW QSGGVDPEES  300
SWSLFPPM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170132.11e-180agamous-like MADS-box protein AGL80
TrEMBLM8A6F40.0M8A6F4_TRIUA; Agamous-like MADS-box protein AGL80
STRINGTRIUR3_26031-P10.0(Triticum urartu)
STRINGTRIUR3_34466-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.16e-17AGAMOUS-like 46