PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_32822-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 160aa MW: 18161.3 Da PI: 6.5861

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_32822-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.1	3.3e-13	42	123	12	99
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k + l++p + ++ +++ + s ++le+++gr+++vk+ k gr++lt+GW++Fv+an+++e+ ++F + g+s+f +v++f++ TRIUR3_32822-P1 42 K-DHLCIPWEVSSQLrDMI-PDSEPIKLETPDGRTYSVKF--FK-FGRITLTSGWRGFVDANHIEENNPMLFVYRGNSTF--KVQIFNS 123 3.34788888776666333.35567*************..44.46899**********************999999..9999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.815	30	124	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-7	31	124	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.69E-17	36	124	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.3E-15	38	125	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.7E-11	42	123	IPR003340	B3 DNA binding domain
CDD	cd10017	6.37E-12	42	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
PGCGGAGGAG CDCGDCEEWR RYCYWNHDHG TKQFLLFASH DKDHLCIPWE VSSQLRDMIP 60 DSEPIKLETP DGRTYSVKFF KFGRITLTSG WRGFVDANHI EENNPMLFVY RGNSTFKVQI 120 FNSSGRDKFL PCSQPPCNHR VLNEQVVPHP EHVDSSAHFG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020170062.1	1e-101	B3 domain-containing protein Os12g0591400-like isoform X1
TrEMBL	T1MTD0	1e-116	T1MTD0_TRIUA; Uncharacterized protein
TrEMBL	T1NPX5	1e-117	T1NPX5_TRIUA; Uncharacterized protein
STRING	TRIUR3_21195-P1	1e-116	(Triticum urartu)
STRING	TRIUR3_32822-P1	1e-118	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16363	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	4e-10	B3 family protein