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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29073-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 94aa MW: 10595 Da PI: 10.8068 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 134.1 | 1.7e-41 | 10 | 78 | 102 | 170 |
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++++++ +p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl TRIUR3_29073-P1 10 QQETEQSAKSAPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 78 4455566666777******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.3E-39 | 11 | 78 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.2E-8 | 20 | 72 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.3E-5 | 27 | 70 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MPMPAAKPAQ QETEQSAKSA PSANRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDITHREA 60 FSAAAKNWAH FPHIHFGLMP DQGFKRTFKA QAVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY313902 | 1e-76 | AY313902.1 Zea mays yabby15 protein mRNA, partial cds. | |||
GenBank | BT036123 | 1e-76 | BT036123.1 Zea mays full-length cDNA clone ZM_BFb0097A05 mRNA, complete cds. | |||
GenBank | BT040048 | 1e-76 | BT040048.1 Zea mays full-length cDNA clone ZM_BFc0062B12 mRNA, complete cds. | |||
GenBank | BT086367 | 1e-76 | BT086367.1 Zea mays full-length cDNA clone ZM_BFc0157F19 mRNA, complete cds. | |||
GenBank | EU960717 | 1e-76 | EU960717.1 Zea mays clone 227877 yabby15 protein mRNA, complete cds. | |||
GenBank | KJ726850 | 1e-76 | KJ726850.1 Zea mays clone pUT3390 C2C2-YABBY transcription factor (YAB8) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155221.1 | 5e-62 | protein YABBY 4-like isoform X2 | ||||
Swissprot | A2X7Q3 | 2e-50 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 2e-50 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | M8ALH9 | 2e-62 | M8ALH9_TRIUA; Protein YABBY 4 | ||||
STRING | MLOC_60897.1 | 2e-61 | (Hordeum vulgare) | ||||
STRING | TRIUR3_29073-P1 | 4e-63 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-39 | YABBY family protein |
Publications ? help Back to Top | |||
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