PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26805-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 356aa    MW: 39432.3 Da    PI: 4.678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26805-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-14956249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +ie+k+ r +tfskRr g+ K A  LSvL++++vav++  ++g ++ +
  TRIUR3_26805-P1  9 FIEDKRERGITFSKRRDGLYKMACDLSVLTGVRVAVVLEMESGIMHSF 56
                     79*************************************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.156160IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-9159IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-8222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-14569IPR002100Transcription factor, MADS-box
PfamPF003191.0E-17956IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-82237IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-83758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
REKREGICFI EDKRERGITF SKRRDGLYKM ACDLSVLTGV RVAVVLEMES GIMHSFGTPS  60
AAPIVEAFLS GGPLVEPLAD EATNARIRML QGEVARLDME SVTHEKRAEL SLEHIKNIQD  120
ENPGIVPNFI FSKEEDLSLE DLNKLFNELL WVREDIRRRM PPLHPISEPK TGGPNVPTNE  180
LMLRGPSCDY LNTPLSSQQP SSSHCIPPQV LSSVPLPSKP QDTMEPHFPM QVPQIFQSAP  240
PSLGSHLTSL VQPIPDPVQD LPPHLQNYPS SYNSMEPPQN NTITNSTIGS IVEGPPQLFY  300
PNGNDFSAGE SFSNGTLAYT PSNQPHYNGN LGMDAYLGHN GNNVGQYNMD YDEFVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174411.10.0agamous-like MADS-box protein AGL62
TrEMBLT1N8L00.0T1N8L0_TRIUA; Uncharacterized protein
STRINGTRIUR3_26805-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.14e-10AGAMOUS-like 102