PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26736-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 403aa    MW: 43095.6 Da    PI: 9.6518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26736-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08105152455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  TRIUR3_26736-P1 105 SHSLAERVRRERISQRMKFLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 152
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-999156No hitNo description
SuperFamilySSF474593.79E-1699166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15101164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964101151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-6105152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEALLLVIPS PAALIPKAPA GKGKAKEPSL STSCQVGEQK EADGKRCRTG DAEKKVKPKA  60
EQAGSDSSVE DGEQRKGGKG KNAKPAEPPK DYVHVRARRG QATDSHSLAE RVRRERISQR  120
MKFLQDLVPG CNKVIGKALM LDEIINYVQS LQRQVEFLSM KLATVNPLDF SNLPTLLHKD  180
MYGPSASSVF SLESSSSAFP FSDQGDVFQS FLPSSMESQC TLNQLDLALS QATNAAAQYA  240
FQDGTATAST NLQQRNFWED DLQSVFHVDT NRQSQDNGVS AESFHAASAG HKDAARAPSL  300
VDGRTSPCPQ TFGGGGRTNP CLHAVMLPCL GCGRSSPTTP SPGAATGGRK KANPGKGAPR  360
GHTKPLALLS VPLLRSSTTS SRRRLAKRCQ CSTTITTTPS CWL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675800.0AK367580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146738.11e-180transcription factor bHLH78-like isoform X2
TrEMBLM8B3D60.0M8B3D6_TRIUA; Transcription factor bHLH78
STRINGTRIUR3_26736-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-50bHLH family protein