PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22043-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 390aa    MW: 43249 Da    PI: 7.3962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22043-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.8e-08101120626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C  f+++G C+yG+rC++ H+
  TRIUR3_22043-P1 101 CT-FYQNGVCSYGSRCRYEHV 120
                      66.6666***********997 PP
2zf-CCCH23.97e-08205226426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ fa+ GtC+yG  C+ +Hg
  TRIUR3_22043-P1 205 PICS-FAAAGTCPYGKDCPQMHG 226
                      5788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-595121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7795122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-597119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4100119IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5100120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296201228IPR000571Zinc finger, CCCH-type
SMARTSM003560.015202227IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5206226IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.15E-14255334No hitNo description
Gene3DG3DSA:3.30.40.103.3E-11263329IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.26E-4269330No hitNo description
SMARTSM001841.1E-6270327IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.371270328IPR001841Zinc finger, RING-type
PfamPF000971.9E-7270327IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180294303IPR017907Zinc finger, RING-type, conserved site
SMARTSM0035614357385IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.671357386IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSNRYRDFSA PLARSGAPRP MIRAGLDGVV ELGGGIGACN ERSGFGLDLA YCATFVVFIA  60
DQGLVQMQWY HAYNLAPGCN SVGENEGDGD FCRNRTVVTV CTFYQNGVCS YGSRCRYEHV  120
EVSSEYTQPS TTAALAPSNS YLSWCPLCEG EIDVSNQTHK SLSVCSVHQS TWRFDDEDCI  180
PEDGNSLSSA LTAQNQALHP LAHLPICSFA AAGTCPYGKD CPQMHGDPCT TCGKQCLHPY  240
RPSEGGAHIK LCKRNNKRLE TLKKSEEMEC SVCLDRVLSK PTAAEKRFGL LPECDHAFCI  300
TCIRKWRSSS LTSSMDIDST VKACPICRKV SYYVIPSATW YSSKEEKQDI IDGYKAKLKS  360
IDCRYFDFGR DTCPFGGRCF YKQQFRMKPN
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631870.0AK363187.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013F15.
GenBankAK3720370.0AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192975.10.0E3 ubiquitin-protein ligase makorin-like isoform X4
RefseqXP_020192977.10.0E3 ubiquitin-protein ligase makorin-like isoform X4
SwissprotQ5ZA071e-117C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLM7ZC250.0M7ZC25_TRIUA; E3 ubiquitin-protein ligase makorin
STRINGTRIUR3_22043-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.25e-90C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]