PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_20591-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 24664.7 Da PI: 9.6575 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.2 | 1.1e-55 | 31 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+ k+++ +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ TRIUR3_20591-P1 31 LPPGFRFHPTDEELITYYLRGKIADAGFTA-RAITEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFT 123 79*************************999.89***************99999****************************************9 PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +elvg+kktLvfykgrap+gek++Wvmheyrl TRIUR3_20591-P1 124 GqppsAQELVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 161 888877888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-64 | 27 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.107 | 31 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-29 | 32 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEGSGAGGGG GGGEGAVSKK KSSKEGEEES LPPGFRFHPT DEELITYYLR GKIADAGFTA 60 RAITEVDLNK CEPWDLPEKA KMGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE 120 IFTGQPPSAQ ELVGMKKTLV FYKGRAPRGE KSNWVMHEYR LHLKPASKSN KDEWVVCRIF 180 AKSPGVKKYP SSTNAHSRSH HHPYTLDMDQ ASPNLYPADS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 28 | 188 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 28 | 188 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 28 | 188 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 28 | 188 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-56 | 28 | 188 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-56 | 28 | 188 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 28 | 188 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186546.1 | 1e-140 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLR3 | 5e-81 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | T1MRQ1 | 1e-163 | T1MRQ1_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_20591-P1 | 1e-164 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9361 | 38 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 3e-88 | NAC domain containing protein 38 |
Publications ? help Back to Top | |||
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