PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17244-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 351aa    MW: 40885.4 Da    PI: 8.1016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17244-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.2e-14351181199
                      HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++r+++p k a+++ g++ +++   tl+ +sg++W+v +  +k  ++ ++  GW+eF+ a++L+e++ ++Fk +g+ +f   v +f++
  TRIUR3_17244-P1  35 DFQQRISIPEKIANNFiGKIANGG--FTLKAPSGEEWRVGV--EKIADKRFFMPGWEEFAMAHELQENELLLFKCSGNCSF--DVLIFDA 118
                      345689*******77787776665..9999***********..66666655555********************9999999..8988886 PP
2B345.31.5e-142563421299
                      HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      ++++l+++ kfa++h +g   +  +l l+  + ++W +k+ +++  ++ + ++ W++Fv++n L+eg +++F+l++  ++++++v+v+rk
  TRIUR3_17244-P1 256 ANNLLIISSKFAADHlEGR--SYEMLLLRPNRKEKWCLKYYHSRVTRG-FNSRRWNKFVRDNMLREGYVCIFELMKGaRKATMTVHVLRK 342
                      57899**********6444..333556666888*******55555544.57889*******************99877*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1923121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.23825119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-1827121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-1527117No hitNo description
SMARTSM010191.7E-928119IPR003340B3 DNA binding domain
PfamPF023621.7E-1136118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-17236341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-17237341IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-13242341No hitNo description
PROSITE profilePS5086310.856245343IPR003340B3 DNA binding domain
SMARTSM010191.7E-9248343IPR003340B3 DNA binding domain
PfamPF023627.4E-13256342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
EKGRCGRCRE WQEHYYWEHM EDVSKISFFK LMTGDFQQRI SIPEKIANNF IGKIANGGFT  60
LKAPSGEEWR VGVEKIADKR FFMPGWEEFA MAHELQENEL LLFKCSGNCS FDVLIFDASG  120
CEKVSCFFAN KKGINMRKQF DNIVSQHGQE HCILSDSDDT SMPLSQLVRS THKASTSKKP  180
RKENGSPNSS NYYLKNEVEQ EEESDDDHTE SNNYYYSRIA NCLSEDEREE IFRQISIQSG  240
NPVYVVVLQK AHVRPANNLL IISSKFAADH LEGRSYEMLL LRPNRKEKWC LKYYHSRVTR  300
GFNSRRWNKF VRDNMLREGY VCIFELMKGA RKATMTVHVL RKVDDKFVLL G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193657.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-142Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLT1MHM80.0T1MHM8_TRIUA; Uncharacterized protein
STRINGTRIUR3_17244-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-30B3 family protein