PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16972-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 320aa    MW: 37013.4 Da    PI: 9.0046
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16972-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-064973123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     + C+   C+ s+srk++L+rH+ tH
  TRIUR3_16972-P1 49 FACHvdGCPFSYSRKDHLNRHLLTH 73
                     78*********************99 PP
2zf-C2H211.70.0007978103123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ Fs k n +rH    H
  TRIUR3_16972-P1  78 FMCPmeGCNRKFSIKGNIQRHVEEfH 103
                      78*******************98777 PP
3zf-C2H2201.8e-06115139123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk F+  s L++H  +H
  TRIUR3_16972-P1 115 FICPeaNCGKAFKYASKLQKHEESH 139
                      78*******************9988 PP
4zf-C2H221.46.8e-07206230223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+  dC++sFs ksnL++Hi+  H
  TRIUR3_16972-P1 206 KCNfkDCKRSFSKKSNLHKHIKAvH 230
                      79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-74475No hitNo description
Gene3DG3DSA:3.30.160.608.3E-104575IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00184973IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3074978IPR007087Zinc finger, C2H2
PROSITE patternPS0002805173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-776104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-676104No hitNo description
PROSITE profilePS501579.28678113IPR007087Zinc finger, C2H2
SMARTSM003550.02978103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-7110139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-5111141No hitNo description
SMARTSM003550.0047115139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427115144IPR007087Zinc finger, C2H2
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SMARTSM003553147172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149172IPR007087Zinc finger, C2H2
SMARTSM0035512175196IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-7186227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-8186243No hitNo description
SMARTSM003550.0048205230IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.36205235IPR007087Zinc finger, C2H2
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4229258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.8236262IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6236262IPR007087Zinc finger, C2H2
PROSITE patternPS000280238262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MFRYECVKHW IPRTPKCQKA LNGPVSGRGD PPEKLHQECL IHALPQRPFA CHVDGCPFSY  60
SRKDHLNRHL LTHQGKLFMC PMEGCNRKFS IKGNIQRHVE EFHEDGPHCG GKKEFICPEA  120
NCGKAFKYAS KLQKHEESHV NLDYTEVICF EPGCMKTFTN VECLKAHNQS CHQYVQCDIC  180
DTKQLKKNFK RHQRMHEGSF VTERIKCNFK DCKRSFSKKS NLHKHIKAVH EQSRPFTCGF  240
SGCGQKFSYK HVRDNHEKSS VHVLFEGDFV EADEQLRPHP GGRKRKPISV DTFMRKRVAA  300
PDAPPAYSDG TEYLRWLLSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-134625919183Aart
2i13_B1e-134625919183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728170.0AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149307.10.0transcription factor IIIA-like
RefseqXP_020149308.10.0transcription factor IIIA-like
RefseqXP_020149309.10.0transcription factor IIIA-like
RefseqXP_020149310.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-86TF3A_ARATH; Transcription factor IIIA
TrEMBLM8A0B50.0M8A0B5_TRIUA; Transcription factor IIIA
STRINGTRIUR3_16972-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.26e-89transcription factor IIIA