PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_15856-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 200aa MW: 21119.2 Da PI: 9.2764 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.5 | 3.6e-24 | 41 | 90 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ TRIUR3_15856-P1 41 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGINSLTRHNIASHLQ 90 6799*****************.****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.859 | 38 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-15 | 39 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 39 | 90 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-23 | 41 | 90 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-7 | 44 | 90 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGGGDRPVVP DAKSPSSTTS SSTEAESRHK SSSKSSHGKK KAKVDWTPEL HRRFVQAVEQ 60 LGIDKAVPSR ILEIMGINSL TRHNIASHLQ GPAAYMPTHG TPCMAMPMAP KFPAPPVPVA 120 MPCPVYTPPS TPPALASKNQ QESQLQLQAQ PSNESIDAAI GDVLSKPWLP LPLGLKPPSL 180 GSVMGELERQ GVANVPQACG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-15 | 38 | 90 | 2 | 54 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF105406 | 0.0 | EF105406.1 Triticum aestivum golden 2-like protein (Glk1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018623137.1 | 2e-51 | PREDICTED: transcription activator GLK1-like isoform X3 | ||||
TrEMBL | M8AMJ9 | 1e-143 | M8AMJ9_TRIUA; Putative transcription factor GLK1 | ||||
STRING | TRIUR3_15856-P1 | 1e-143 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 1e-23 | GOLDEN2-like 2 |