PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14607-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 649aa    MW: 74065.9 Da    PI: 8.6051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14607-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.5e-163781798
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     ++p kf+++ ggk   s  ++le+++g++++v +   k  +  vl++GW++F++  +L+egD + Fk++g+s f  +v +++
  TRIUR3_14607-P1  3 TIPEKFVRSVGGK--ISELVKLETPDGNTYNVHI--AKELNNLVLRSGWSKFARVYELQEGDLLRFKYNGDSHF--KVEIYD 78
                     79********999..7779***************..**********************************9999..888776 PP
2B345.51.4e-141922593099
                      ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      +e  + l +++ ++++W   ++  + +++y l++GW +Fv++n+L+ gD++vF++ +r ++f++ v+++++
  TRIUR3_14607-P1 192 PE--IPLYVKTIHSKTWGAHYR-INADDTYHLSTGWLGFVDDNQLQKGDTCVFEVLKRqRSFTMAVHLLKA 259
                      33..45999************5.34445699***********************88777*******99876 PP
3B355.21.3e-17362452199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      ffk +      +++r+++p kfa+++  +++  +++   l+ +sg++W v +  +k ++  ++++GW +F+ka++L+e+D +vF+++g ++f  
  TRIUR3_14607-P1 362 FFKLM---TQDSQQRIRIPDKFASNFirQMQ--SPQGFDLKAPSGETWHVGV--SKVGNDLFFSSGWVDFAKAHELQENDLLVFTFSG-NSF-- 445
                      56666...33455679*******88877555..45559999***********..99999**************************988.666.. PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                       v +f++
  TRIUR3_14607-P1 446 EVLIFDA 452
                      7888876 PP
4B342.98.9e-14542624487
                      E-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   4 vltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      vl++++  ++ + lv+p +f+ eh     +++  l l+  + ++W v + y+++s++ + ++ W +F ++n+L  gD++vF+l++ 
  TRIUR3_14607-P1 542 VLLRAHLQRKdNFLVIPSEFVHEHlH-M-RSHEVLLLRPNREERWHVSY-YQGSSSKGFRGQPWVKFIHDNKLHKGDICVFELIKG 624
                      55555555553778*******99953.2.2343566666888*******.888888888999********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.789180IPR003340B3 DNA binding domain
SMARTSM010191.8E-7180IPR003340B3 DNA binding domain
PfamPF023621.9E-13378IPR003340B3 DNA binding domain
CDDcd100175.19E-16378No hitNo description
SuperFamilySSF1019361.47E-17382IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-18382IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.011168260IPR003340B3 DNA binding domain
CDDcd100171.35E-7191258No hitNo description
SuperFamilySSF1019363.53E-12194258IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-11194259IPR003340B3 DNA binding domain
PROSITE profilePS5086311.519196260IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-11198260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-20355455IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465359453IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-20359455IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-19361451No hitNo description
PfamPF023624.6E-15362452IPR003340B3 DNA binding domain
SMARTSM010191.2E-14362453IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-17531644IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-16532643IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-13537642No hitNo description
PfamPF023629.0E-12539624IPR003340B3 DNA binding domain
SMARTSM010199.3E-9539644IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449540644IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
LQTIPEKFVR SVGGKISELV KLETPDGNTY NVHIAKELNN LVLRSGWSKF ARVYELQEGD  60
LLRFKYNGDS HFKVEIYDPS ACEKETSCVV MNHNPGLQKR SVPRDNPMLS PEGERLAKRH  120
NGCCSDSCKT SKMNPAGTPH KPTKREAPSS EDARSSGELQ TSTRSRYFLA TGCNLTDAHK  180
VEVNKIEQNI RPEIPLYVKT IHSKTWGAHY RINADDTYHL STGWLGFVDD NQLQKGDTCV  240
FEVLKRQRSF TMAVHLLKAS YHHPPGFPAS SKSLRPEAKS FRPADKVRLS RFTTLEGLLK  300
TKVYEKVEAI KPEIPVFVSI MMKTNVSSRS PNEMMGEKGC ESCKKWQEHY YWEHMDVSKT  360
RFFKLMTQDS QQRIRIPDKF ASNFIRQMQS PQGFDLKAPS GETWHVGVSK VGNDLFFSSG  420
WVDFAKAHEL QENDLLVFTF SGNSFEVLIF DASGCEKLSS LFAGAGMRKH FDGKDLLPGS  480
PNCSSSCDVK HEETEEEESD DDTYADFDYC YSRVVKQLPD DEKHEIIGLT SLQRGNPAFM  540
TVLLRAHLQR KDNFLVIPSE FVHEHLHMRS HEVLLLRPNR EERWHVSYYQ GSSSKGFRGQ  600
PWVKFIHDNK LHKGDICVFE LIKGARNENK KAGTTMTVHV VRRKKSDGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738481e-136AK373848.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3045G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLT1MAI90.0T1MAI9_TRIUA; Uncharacterized protein
STRINGTRIUR3_14607-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-29B3 family protein