PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12386-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1008aa    MW: 111568 Da    PI: 7.1394
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12386-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.8e-21180267183
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F 
  TRIUR3_12386-P1 180 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI 267
                      89*********************999*****9555555.49**********************************************96 PP
2Auxin_resp113.52e-37327409183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaas++s F+++YnPr+s+s Fvv+v++++ka +++ svGmR+ m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+
  TRIUR3_12386-P1 327 AAHAASSGSSFTIYYNPRTSPSPFVVPVARYNKANYIQQSVGMRMAMMFETEESSKRRYTGTIVGVSDSDPMRWPNSKWRNLQ 409
                      79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-40171330IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-36173315IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-19179279No hitNo description
SMARTSM010198.7E-19180281IPR003340B3 DNA binding domain
PfamPF023628.0E-19180267IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265180303IPR003340B3 DNA binding domain
PfamPF065073.1E-33327409IPR010525Auxin response factor
PfamPF023093.9E-10864991IPR033389AUX/IAA domain
PROSITE profilePS5174525.301904988IPR000270PB1 domain
SuperFamilySSF542777.85E-9921983No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1008 aa     Download sequence    Send to blast
MAAASQEKQQ QLPTFGGRRR QEGDQLGALA RLRRPARLPA AAREPRLLLP PRPQRAGASQ  60
SFFSTNSPAL FIWFRSLDSI HGMLKFFLIW QVAATTKKTP NSRIPNYPSL PSQLLCQVHN  120
ITMHVGAHGS SSGSGVIGAD KDTDEVYAQM TLQPVNSETD VFPIPSLGSY AKSKHPAEYF  180
CKNLTASDTS THGGFSVPRR AAEKLFPQLD YSMQPPNQEL IVRDLHDNMW TFRHIYRGQP  240
KRHLLTTGWS LFVGAKRLKA GDSVLFIRFP LGEFVRIKRP FLTKVTGFRD EKSQLLVGVR  300
RATNQQTALS SSVLSTDSMH IGVLAAAAHA ASSGSSFTIY YNPRTSPSPF VVPVARYNKA  360
NYIQQSVGMR MAMMFETEES SKRRYTGTIV GVSDSDPMRW PNSKWRNLQI EWDEHGYGER  420
PERVSIWDIE TPENTIVFPS ASLNSKRQCL PGYGVPGLDI ASVNMSPFQR APGNPYGNLQ  480
HMPAVGSELA MMMFLNQSGQ NIGTPLSCHQ SSYSSIIQNV KQNYMPPSTF GHPIGSIKPE  540
SMPSNEVQQQ QQLHAPKMQR GDSESCEVHP ATDSVSASEL HVAGREPRNT DKYPSQSISE  600
QNGKGEPRVK PRRSKKGSSR KTISENSELS SAPSRICDDQ LHVSEAELIS CDTKNVNCGN  660
NEGSSGALTH GDFAGQLQCQ QVEQNELVSP PKLESSISPD GGKSVNSFPN QASFSQFFDG  720
LDWMVQPPYY QDSNGIQSVS ASENIFSPSA NMASTINTDT LETFQNSCLS DCFPNSIQDF  780
VGSPDLHSLT FLSPEMQNLD VRHDGSNVPS TSNSYVQMSF SEDDSGNHME SMQRGMNNIS  840
SCSQPQTTEG FNLGMYSKLP SLKESQVLSL PEIHNSSRGT SSCSMDAAEY SIDRNAKPMK  900
PPVRTYTKVQ KLGSVGRSID VTRYRDYREL RSAIASMFGL QGKLEHPASS DWKLVYVDYE  960
NDVLLVGDDP WEEFINCVRC IRILSPSEVQ QMSENGMQVL NDCIQADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1539143283390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699300.0AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160868.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM7YSA50.0M7YSA5_TRIUA; Auxin response factor
STRINGTRIUR3_12386-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-158ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]