PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12004-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 360aa    MW: 42408.7 Da    PI: 10.3762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12004-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.63.5e-21351151298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + r+++p +f++++ gk  +++t++l +++g +++v++  +k+ ++ vl +GWk F++a++L+ gDf+vFk+dg+s+   +v +f 
  TRIUR3_12004-P1  35 FHERMIIPDRFVQHFRGK--RGRTIKLVSRHGYTFDVQI--TKNLEKLVLDSGWKAFARAHNLRRGDFLVFKYDGHSQL--KVLIFG 115
                      4568********877888..6779***************..********************************997777..787775 PP
2B3469.2e-152833591897
                      --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
               B3  18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      +++k+ae +     ke   ++   +++g++Wev++++++++ +  l +GWk+F++ n L+ gD ++F+l ++ ++  ++v+++
  TRIUR3_12004-P1 283 ISRKYAEVYlpF--KE---QMLTLQRHGKKWEVRCRVKNNKTKR-LMRGWKHFARGNSLRLGDACLFELLRNkKKYVMNVHII 359
                      677788777421..22...2445668*********997777665.556********************999877777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2321119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-2322119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.14224117IPR003340B3 DNA binding domain
CDDcd100172.97E-2225114No hitNo description
PfamPF023621.1E-1827114IPR003340B3 DNA binding domain
SMARTSM010191.5E-1427117IPR003340B3 DNA binding domain
SMARTSM010192.1E-7270359IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-17273359IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-19275360IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731283360IPR003340B3 DNA binding domain
CDDcd100171.02E-14283360No hitNo description
PfamPF023623.9E-13283360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGKPCKKHKE LDEHRYWNHT EEQDKRFFKV MIGDFHERMI IPDRFVQHFR GKRGRTIKLV  60
SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HNLRRGDFLV FKYDGHSQLK VLIFGPSGCE  120
KLPACNLMKN AAPAKDWWGN TDDIVNTCHD PPMKFPHCGR QIRPKDDHSL PGCILANGTL  180
LNLNRVQKKQ LKEKIRAMNS EIPIYGCVIR KSSIYGANRS LELKPLFLNG YCIANEWSIW  240
LFIFAFYLQK QCLSYPSVVG LFCIFIEVVF HITKDPFSLY QDISRKYAEV YLPFKEQMLT  300
LQRHGKKWEV RCRVKNNKTK RLMRGWKHFA RGNSLRLGDA CLFELLRNKK KYVMNVHIIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-161HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162967.11e-175putative B3 domain-containing protein Os03g0621600
TrEMBLT1M3G30.0T1M3G3_TRIUA; Uncharacterized protein
STRINGTRIUR3_12004-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-22B3 family protein