PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11692-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 274aa    MW: 29050.5 Da    PI: 5.7361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11692-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09192235755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  TRIUR3_11692-P1 192 AVAKVRRERISERLKVLQDLVPNG-----TKVDMVTMLEKAITYVKFLQ 235
                      56799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12187242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-13187239No hitNo description
SuperFamilySSF474593.79E-13188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6193235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MACKRATTRE LRAMYDDEPS SMSLELFGYH GVVVDGDDEE GDTATALPQL SFVDNFKGGC  60
GSAAADYYSW AYNASGGTPG ASSSSTSSVL SFEHAGGAGH QLAYNAGTGD DDCALWMDSM  120
ADQHGAARFG FMNPGSADVV PEIQESSIKQ PAKSAQKRSS SGGEAQAAAK KQCGGGRKSK  180
AKVVPTKDPQ SAVAKVRRER ISERLKVLQD LVPNGTKVDM VTMLEKAITY VKFLQLQVKV  240
LATDEFWPVQ GGKAPELSQV KTALDAILSS QQQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9246600.0AB924660.1 Triticum aestivum gene for MFT-3A, complete cds, cultivar: Chinese Spring, clone: WCS1322O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186198.10.0transcription factor bHLH113-like
TrEMBLM7YKP00.0M7YKP0_TRIUA; Transcription factor bHLH83
STRINGTRIUR3_11692-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.16e-47ROOT HAIR DEFECTIVE6