PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01525-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 528aa    MW: 57760.7 Da    PI: 7.5316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01525-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06250274123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   Cgk F ++s LkrH  tH
  TRIUR3_01525-P1 250 YVCQepGCGKKFVDSSKLKRHHLTH 274
                      99********************999 PP
2zf-C2H211.90.00068324348123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp   Cgk+F++   Lk Hi+tH
  TRIUR3_01525-P1 324 HICPfpACGKRFTSDFKLKCHIKTH 348
                      5799999*****************9 PP
3zf-C2H215.54.8e-05394419123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   Cgk + + + L+ H++t H
  TRIUR3_01525-P1 394 YVCPyeGCGKAYIHGYKLNLHLKTqH 419
                      99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001379.1E-10149IPR002379V-ATPase proteolipid subunit C-like domain
Gene3DG3DSA:1.20.120.6101.0E-481119No hitNo description
TIGRFAMsTIGR011001.1E-41194IPR011555V-ATPase proteolipid subunit C, eukaryotic
PRINTSPR001224.9E-48327IPR000245V-ATPase proteolipid subunit
PRINTSPR001224.9E-482953IPR000245V-ATPase proteolipid subunit
SuperFamilySSF813335.23E-1461119IPR002379V-ATPase proteolipid subunit C-like domain
PfamPF001375.9E-1570119IPR002379V-ATPase proteolipid subunit C-like domain
PRINTSPR001224.9E-4880106IPR000245V-ATPase proteolipid subunit
PRINTSPR001224.9E-48107130IPR000245V-ATPase proteolipid subunit
Gene3DG3DSA:3.30.160.604.2E-12217247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.014221245IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094221250IPR007087Zinc finger, C2H2
SuperFamilySSF576672.43E-5222246No hitNo description
PROSITE patternPS000280223245IPR007087Zinc finger, C2H2
SuperFamilySSF576672.43E-9245287No hitNo description
Gene3DG3DSA:3.30.160.604.9E-13248270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.129250279IPR007087Zinc finger, C2H2
SMARTSM003559.7E-4250274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252274IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-8271295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035577280318IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.44E-9304350No hitNo description
Gene3DG3DSA:3.30.160.602.6E-10310349IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.073324348IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91324353IPR007087Zinc finger, C2H2
PROSITE patternPS000280326348IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-9387417IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.42E-6389418No hitNo description
SMARTSM003550.0077394419IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577394424IPR007087Zinc finger, C2H2
PROSITE patternPS000280396419IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0033179Cellular Componentproton-transporting V-type ATPase, V0 domain
GO:0015078Molecular Functionhydrogen ion transmembrane transporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGAAYGTAKS GVGVASMGVM RPELVMKSIV PVVMAGVLGI YGLIIAVIIS TGINPKAKPY  60
FLFDGYAHLS SGLACGLAGP AAGMAIGIVG DAGVRANAQQ PKLFVGMILI LIFAEALALR  120
RMPEGREGDP IVKHREEGVV FPRIDKEKTV YTTKSKIYLI LCSLSFSLSW SCDCLQCLIG  180
DWLLRNLCAE DVYKNLKENG GVGQEPEAQP RKVEPATEIL FLCSYDNCGK TFVDVAALRK  240
HAHVHGERQY VCQEPGCGKK FVDSSKLKRH HLTHTGQKDF VCPHPGCEVY FLLRHNFLFA  300
SLQAFSLDFN LRAHLKTHAV ENYHICPFPA CGKRFTSDFK LKCHIKTHEK TGSPIAVQHT  360
PPAEKPQSTI KPSIQATPKP SAPTPPSFSS ERPYVCPYEG CGKAYIHGYK LNLHLKTQHP  420
DHNQENNGRS ATPAAGYNYA DGGDIAPNPK RSKTSQVHRA PPSNAYNVKV SSRMGVDTSG  480
AKNQWPGKGM YDDDSEETEE DPGGNNVEDG WRYGNQNADD EETEEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5tj5_E6e-42111918133V-type proton ATPase subunit c
5tj5_F6e-42111918133V-type proton ATPase subunit c
5tj5_G6e-42111918133V-type proton ATPase subunit c
5tj5_H6e-42111918133V-type proton ATPase subunit c
5tj5_I6e-42111918133V-type proton ATPase subunit c
5tj5_J6e-42111918133V-type proton ATPase subunit c
5tj5_M6e-42111918133V-type proton ATPase subunit c
5tj5_N6e-42111918133V-type proton ATPase subunit c
6o7w_k8e-42111926141V-type proton ATPase subunit c
6o7w_l8e-42111926141V-type proton ATPase subunit c
6o7w_m8e-42111926141V-type proton ATPase subunit c
6o7w_n8e-42111926141V-type proton ATPase subunit c
6o7x_g8e-42111926141V-type proton ATPase subunit c
6o7x_h8e-42111926141V-type proton ATPase subunit c
6o7x_i8e-42111926141V-type proton ATPase subunit c
6o7x_j8e-42111926141V-type proton ATPase subunit c
6o7x_k8e-42111926141V-type proton ATPase subunit c
6o7x_l8e-42111926141V-type proton ATPase subunit c
6o7x_m8e-42111926141V-type proton ATPase subunit c
6o7x_n8e-42111926141V-type proton ATPase subunit c
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591910.0AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180408.10.0uncharacterized zinc finger protein At4g06634-like
TrEMBLT1LAK10.0T1LAK1_TRIUA; Uncharacterized protein
STRINGTRIUR3_01525-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.33e-81C2H2 family protein