PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF106100060CFD_t1 | ||||||||
Common Name | TRAES_3BF106100060CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 260aa MW: 27777.7 Da PI: 7.4241 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.2 | 3.3e-21 | 24 | 71 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie++ rqv fskRr+g++KKA+EL vLC+aeva ++fs+ gk + + TRAES3BF106100060CFD_t1 24 KIESEEARQVCFSKRRAGLFKKASELAVLCGAEVAAVVFSPAGKAFSF 71 69*****************************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.703 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-34 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-28 | 15 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.47E-39 | 16 | 83 | No hit | No description |
PRINTS | PR00404 | 6.1E-20 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-26 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-20 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-20 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAMATATAPR RRASMGRQKI EIRKIESEEA RQVCFSKRRA GLFKKASELA VLCGAEVAAV 60 VFSPAGKAFS FGHPSVEAIL DRFVPSAAQQ PGAVVPGAGL GAAGDRNLAE LNRQYGELRT 120 QLEAEKARKE RAEEAMAKER AAGNQMAAWL DADLRDMGEE ELMAFAAALV EVQAAVSERA 180 NQVLQEALNV GRSRSASRML QAPPPPQQQQ QLAGGGTFEF GNTSTNAGME IQQMLLAMPP 240 PPPPGFAPGM DMVQHGGFPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-16 | 15 | 87 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-16 | 15 | 87 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-16 | 15 | 87 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-16 | 15 | 87 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185579.1 | 1e-137 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A077RWB2 | 0.0 | A0A077RWB2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QJ23 | 0.0 | A0A446QJ23_TRITD; Uncharacterized protein | ||||
STRING | EMT32481 | 1e-141 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-31 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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