PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF096900170CFD_t1 | ||||||||
Common Name | TRAES_3BF096900170CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 387aa MW: 41355.3 Da PI: 7.6022 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.8e-08 | 122 | 142 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C +aHg TRAES3BF096900170CFD_t1 122 ACPDFRK-GGCKRGDACEYAHG 142 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.4E-5 | 117 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 118 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 121 | 144 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 122 | 142 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MMMMSEGVSV PPWGNHLPVS GVDAGGGGGG DETPFLFAAL RQYLPCNDVL GGAGAGAEDE 60 DEAAAVAAAV DAYACDEFRM YDFKVRRCAR GRSHDWTECP FAHPGEKARR RDPRKYHYSG 120 TACPDFRKGG CKRGDACEYA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRA 180 MPSQHSSPRS TPLSPLAESY DGSPLRRQAF ESYLSKSIMS SSPTSTLLSS PPKSPPSESP 240 PLSPDGAASF RRGSCGSWPG VGSPVNDVLA SLRQLRLAKA QASPSGGWSG YPTSPAAYGS 300 PKAAGLYSLP TTPMGAQTGA SSFMPNLEPL NLRFLDDEEP VQRVESGRAL REKVFERLSR 360 DGAAPRSCEV GAGAGGPDVG WVSDLIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192020.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 0.0 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A077RQC7 | 0.0 | A0A077RQC7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PGC3 | 0.0 | A0A446PGC3_TRITD; Uncharacterized protein | ||||
STRING | MLOC_63525.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 5e-82 | C3H family protein |
Publications ? help Back to Top | |||
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