PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF094600010CFD_t1
Common NameTRAES_3BF094600010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1321aa    MW: 145613 Da    PI: 8.7508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF094600010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000512271250223
                               EET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                               +Cp   Cgk F ++ +L +H ++H
  TRAES3BF094600010CFD_t1 1227 TCPvkGCGKKFFTHKYLLQHRKVH 1250
                               79999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.7E-112768IPR003349JmjN domain
PROSITE profilePS5118313.5922869IPR003349JmjN domain
PfamPF023753.2E-122962IPR003349JmjN domain
PROSITE profilePS5118435.417208374IPR003347JmjC domain
SMARTSM005582.5E-46208374IPR003347JmjC domain
SuperFamilySSF511973.02E-25220371No hitNo description
PfamPF023731.4E-36238357IPR003347JmjC domain
SMARTSM003552211291151IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.74611521181IPR007087Zinc finger, C2H2
SMARTSM003552311521176IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011541176IPR007087Zinc finger, C2H2
SMARTSM003551112031225IPR015880Zinc finger, C2H2-like
SMARTSM003550.5612261250IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.81912261255IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-612271254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012281250IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-912431284No hitNo description
Gene3DG3DSA:3.30.160.603.1E-712551280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.42912561285IPR007087Zinc finger, C2H2
SMARTSM003550.03112561280IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012581280IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-612741308No hitNo description
Gene3DG3DSA:3.30.160.602.4E-712811308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.86812861317IPR007087Zinc finger, C2H2
SMARTSM003552.912861312IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012881312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1321 aa     Download sequence    Send to blast
MPSSSPPPPP PGASGDAVPP WLKALPLAPE FHPTAAEFAD PVAYLLRIEP AAAPFGICKV  60
VPPCARPPRK ATLANIARSL AANDKADADD HAQSPPSFPV RHQYLGLCPR RPRPALQTVW  120
LSARRYTLPQ FESRAAAARA PLLARLGVPA AKHQGDRLPP LDHEALFWRA ASADRPITVD  180
YASDMPGSGF PPCAARSAQG QQPAHVGETA WNMRTAARSP GSLLRFMRDE VPGVTTPMLY  240
VGMLFSWFAW HVEDHDLHSL NYMHLGAAKT WYGVPRDAAL AFEDVVRVHG YAGEVNPLEA  300
FATLGNKTTL LSPELLVGSG VPCCRLVQNA GEFVVTFPGS YHCGFSHGFN CGEASNIATP  360
EWLRVAKEAA VRRASINQPP MLSHYQLLYE LALSMCIRDP SIGAMEPRSS RLKEKKKGEG  420
GQLVKKLFVQ NAIQDNELLS CLLNDGSSCI ILPINAHDGP VLSALRSRSQ LIPKSKLSDG  480
LCSNGETLEA LARCTHNSHN AEGDKADVIS AAGLLDQGLL SCVSCGILSF SCVAVIKPRE  540
CASKYFMSYD YNSINDQLVD SGGCHLANAA GSEGTNGGIL RPGFELHGTE ILPDAGPVTD  600
SAPDLLASAY GNQPDTDEHN RNKKIKVSHD SSELDGTKIP SSSIKCQQRP SSQSSQCIGG  660
SSISNGPRGV RTRNKYQLKM ALSQGFQLKN NYWTMEQKVQ PEPSRSKETV KEPLDASGAD  720
NDARCSTAIS VGGPRISTTT MDNLNKPIVK IDKDSARMHV FCLEHAVEVE KQLQAIGGAH  780
VILLCRPVLF KITVILSINV EYLRIEAEAR SLAAELEVEH GWKDIHFREA NMEDRKMIEE  840
LLQDEESIPT SSDWAVKLGT NLYYSANLAK SPLHNKQIPY NRVIYRAFGR SSPDNSPVKL  900
ENCEGSRDTQ KKIVLAGRWC GKAWMSNQVH PFLAQRIESS ELEETDKSSG VEASKRNSST  960
ITDVPKSSSK KRENMAVEVT TDTKRPRLAK GYSSKALKGV AEVSHPSPTA VVPRVSSRIA  1020
DRANRLKSEM TEEPKATSHS RTRPPKKFEV EAKKQMKMRK EDKMMAPTAP KDDEERPSAT  1080
KGGPSVGPAT KLEFSQRKRR TRTDTMKQLK KATGEERTPR DHPMHVEGYT CSIEGCSMSF  1140
DTRNKLSLHE LDMCPVEGCG KKFFTHKFLL QHGKVHIETT KQLKKATGEE RAPRDHRMRV  1200
EGYTCTIEGC SMSFDTKKEL SLHERDTCPV KGCGKKFFTH KYLLQHRKVH TDDRPLKCPW  1260
EGCDVAFKWA WARTEHLSVH TGDRPYVCRE PGCAETFRFI SDFSRHKRET GHSTKQTKTK  1320
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A9e-73213958353Transcription factor jumonji (Jmj) family protein
6ip4_A9e-73213958353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110951100QRKRRT
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A077S2V00.0A0A077S2V0_WHEAT; Uncharacterized protein
STRINGEMT192880.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-171relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]