PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF066700160CFD_t1 | ||||||||
Common Name | TRAES_3BF066700160CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 222aa MW: 23895.5 Da PI: 7.0959 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.5 | 2.8e-28 | 128 | 185 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +dDg++WrKYG+K vk+s++ r+YYrC+ +gC vkk++er+++dp++v +tY g Hnh TRAES3BF066700160CFD_t1 128 MDDGFRWRKYGKKAVKSSPNLRNYYRCSAEGCGVKKRIERDRDDPRYVLTTYDGVHNH 185 59******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-29 | 116 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-25 | 120 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 123 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-31 | 128 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-22 | 129 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAASLGLTSH EACCTVHPTG SSLYNFQADD PFVAAADGAA ELSFPELVEA ARASDYSPLP 60 AFGVAGGETM NMYGRSVVFP MTTSYYCDGA GMFDGDASAR GRWGGIGAMT GRPSGRIGFR 120 TRSEVEVMDD GFRWRKYGKK AVKSSPNLRN YYRCSAEGCG VKKRIERDRD DPRYVLTTYD 180 GVHNHVTPGS TSSRAAPAYS APTAPAWTWS ELHAAAHSSE SY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 114 | 188 | 3 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 114 | 188 | 3 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188165.1 | 1e-144 | WRKY transcription factor WRKY24-like | ||||
TrEMBL | A0A077RX67 | 1e-163 | A0A077RX67_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PG84 | 1e-163 | A0A446PG84_TRITD; Uncharacterized protein | ||||
STRING | EMT11324 | 1e-144 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 6e-38 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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