PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0023400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9480.99 Da    PI: 11.1606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0023400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.5e-161050444
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    e + +r  t+ kRr g++KKAeEL  LCd++ +vi fs++ 
  Spipo8G0023400 10 EQDARRRNTLKKRRSGVIKKAEELHMLCDVQTCVIFFSPNE 50
                    67899*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-9158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.371149IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-8121IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-17264IPR002100Transcription factor, MADS-box
CDDcd002662.78E-16256No hitNo description
PfamPF003194.4E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-82136IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-83657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MKKIRIRWLE QDARRRNTLK KRRSGVIKKA EELHMLCDVQ TCVIFFSPNE DQPAAFRSVE  60
QAVKSSRTFK QQPQFNRGGC G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-12AGAMOUS-like 96