PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo6G0052700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25207.7 Da PI: 6.8792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 85 | 131 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+riNs +++Lr +l + K +Ka+ L kAv+++++L Spipo6G0052700 85 RNHREAEKRRRERINSHLDRLRAILACD-----SKIDKASLLAKAVQHVRDL 131 68************************98.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.881 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-13 | 85 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 85 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-12 | 86 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-9 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.50E-4 | 95 | 133 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.1E-5 | 165 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MRGEELFPME QQILPGSLNM FRGLPESLQP ELGFFGSMEP LSYSSDHGVE AMAWGIPGLF 60 SPFHPPEMVG ATAEEPLNRA TAAARNHREA EKRRRERINS HLDRLRAILA CDSKIDKASL 120 LAKAVQHVRD LKQRASEIDN VEHFPSETDE ISVHPDGRRP TFTASLCCED RAGLLPELGE 180 AVKSLRLRIL RAEIATLGGR DALRALVDRP EAAECQKRRR VLENR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 220 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010271836.1 | 2e-59 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 2e-38 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1D1YAF7 | 7e-73 | A0A1D1YAF7_9ARAE; Putative transcription factor bHLH107 | ||||
STRING | XP_010271836.1 | 8e-59 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 8e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo6G0052700 |
Publications ? help Back to Top | |||
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