PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0007600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 25602 Da PI: 7.9224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.9e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++v +G g+W+++++ g+ R++k+c++rw +yl Spipo5G0007600 24 RGLWSPEEDEKLIKYVSTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 71 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.2e-17 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ l+++++++lG++ W+ Ia++++ gRt++++k++w++ Spipo5G0007600 77 RGNFSHQEESLIIELHRLLGNR-WAQIAKHLP-GRTDNEVKNFWNS 120 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.58 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-30 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-17 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.27E-13 | 27 | 71 | No hit | No description |
PROSITE profile | PS51294 | 26.019 | 72 | 126 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 75 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.75E-12 | 79 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
GEKKKSGSAD MGHHSCCNKQ KVRRGLWSPE EDEKLIKYVS THGHGCWSSV PKLAGLQRCG 60 KSCRLRWINY LRPDLKRGNF SHQEESLIIE LHRLLGNRWA QIAKHLPGRT DNEVKNFWNS 120 TIKKKLISRA FDVLDIPSMV SPVPIAGDLH NVDAYPGELV GAAQEALFFL PHSDGSEMEI 180 KLDLPSHDVD LGTLPSFLQH QASSYDWPFS HQTTVTVNCH EVNGSTTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 24 | 126 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009407596.1 | 3e-83 | PREDICTED: transcription factor MYB26-like | ||||
Swissprot | Q9SPG3 | 2e-70 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A3S3P4I0 | 7e-83 | A0A3S3P4I0_9MAGN; Transcription factor MYB26 | ||||
STRING | GSMUA_Achr6P35800_001 | 1e-82 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 4e-76 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0007600 |
Publications ? help Back to Top | |||
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