PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0043700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | GeBP | ||||||||
Protein Properties | Length: 197aa MW: 21649.3 Da PI: 9.2999 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 81.5 | 1.2e-25 | 29 | 115 | 2 | 87 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 +++r+w+eeDe++lL G++df+ak+g +p d+fyef++ +++++sk+ + +K+rrLK+K+ + +++ +g++p+ +k+hd+ Spipo4G0043700 29 ASKRVWNEEDEVTLLIGMVDFQAKHGGaDPAVAFDDFYEFIRLTLHAEFSKTKIYKKVRRLKQKYMANLSRSMQGDDPASAKSHDRA 115 579******************99987659999*****************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.5E-22 | 31 | 115 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MTHPSSTADA GERSAATVAA GGNASSTEAS KRVWNEEDEV TLLIGMVDFQ AKHGGADPAV 60 AFDDFYEFIR LTLHAEFSKT KIYKKVRRLK QKYMANLSRS MQGDDPASAK SHDRAKSGAP 120 MNPVAPLHSD GRHKHLDFDA AAQGNAKKRR HKVRVSAAAI DVSRFKHHVA GYRLLLEQEL 180 LEKQIIEYLF DADDSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 151 | KKRRHK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25650.1 | 9e-18 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0043700 |