PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0080100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 442aa    MW: 48016 Da    PI: 7.4786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0080100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31222280259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+rsaed +++++tYeg+Hnh+
  Spipo3G0080100 222 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRSAEDRTILVTTYEGSHNHP 280
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-32206282IPR003657WRKY domain
SuperFamilySSF1182901.44E-27214282IPR003657WRKY domain
PROSITE profilePS5081130.136216282IPR003657WRKY domain
SMARTSM007741.3E-36221281IPR003657WRKY domain
PfamPF031069.7E-27223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MERQREIEEV DFFSEIRSGS GDVSHDRRRG SSDHKEPSVS GVNTRLHLRT VSYEIGGEER  60
VRSDLKLTTL QDELSRLCEE NRRLKSMVEK VTRDYSALKC QFFLAKQQNT KENSQPKIGG  120
LHEEFEDRKP LAFRFTVETG AADPSDVEDR DPSPSLTNSA DTASKGHRLT AAKRCLSFDG  180
LTHDGLSEND KIPNVANDGA AEMPCRRARV SVRAVSEAPL ISDGCQWRKY GQKMAKGNPC  240
PRAYYRCTMA VGCPVRKQVQ RSAEDRTILV TTYEGSHNHP LPPAAAAMAN TTSAAAAMLL  300
SGSSTSCDSL AATGFYPPSY ATTMATLSPS APFPTITLDL TQPQNGLMPF HNNPMAAAMP  360
FPFPMTLPQK RLGFLPAAQV DHQQSSIVET LTSAITADPN FTASLTAAIS SIMAGPRIAN  420
SSKVVPESPQ LPQSCTTFAT Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22208284176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909377.11e-127probable WRKY transcription factor 47
TrEMBLA0A061DRV71e-119A0A061DRV7_THECC; WRKY family transcription factor, putative
STRINGEOX954651e-120(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-53WRKY family protein