PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo3G0050600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 332aa MW: 36106.6 Da PI: 4.6284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0050600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.7	2.8e-05	179	246	9	55
HHHHHHHHHHHHHHHHCTSCCC.......................TTS-.STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkas....................kapskK.lsKaeiLekAveYIksLq 55 rrRR++i +++ L e P++ k++s + ++L A++YIk+L+ Spipo3G0050600 179 SRRRRAKIAEGIKALEESTPQSGkvqleprsvfrisaavafncKESSSFdGTRESVLDDAIDYIKYLK 246 59*****************7679**************66666669999**********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.566	170	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-6	180	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-5	180	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEGNSQGTFN HPEPGSSSVA VGIECVCENA LDAAVDELEA QKNSFVAESL LPSLYDQPSC 60 DDVDLLSAIP LPPDGTPQEF IAKYGCWKAD DDPEALGHPL SKRLKRPPVF SEFHCHDQRD 120 MWSLEDYLVS LYPCPVEERL HEESYNAAVQ SEASAAAAVT VAAQGLCSKE STSSNAIDSR 180 RRRAKIAEGI KALEESTPQS GKVQLEPRSV FRISAAVAFN CKESSSFDGT RESVLDDAID 240 YIKYLKLQLL ASHALGQSRL GGEPIHHPFV HLEGFGHYIL HQQMRTEPLE EVMGHLMESN 300 LPAAIRLLES KGLELLPISS ADIILRAGAA L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25051	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-11	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Spipo3G0050600