PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo27G0017700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

BES1

Protein Properties

Length: 377aa MW: 41104.4 Da PI: 9.5893

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo27G0017700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	108.8	9.6e-34	126	200	2	76
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 +s r+p+++Er +n RERrRR +aa+i+a LRaqG+++lpk+ D+n+VlkALc++AGw ve+DGt +rk + Spipo27G0017700 126 TSLRSPSEQERSKNLARERRRRMVAARIFASLRAQGGFPLPKHPDQNDVLKALCQQAGWHVEEDGTIHRKMHTQW 200 578******************************************************************866554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.4E-30	128	207	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MMHHHVPTLS NLIVVAKVLA EREVERIPCV QSAESGCPTV SLFLASESCG VREKITEETK 60 EVERQSNWVS VCACVRERER EREEERRREE NRVWRVEGGR GRKGCIRASR GPWVVRRVGR 120 DGVLRTSLRS PSEQERSKNL ARERRRRMVA ARIFASLRAQ GGFPLPKHPD QNDVLKALCQ 180 QAGWHVEEDG TIHRKMHTQW HACEPPAKAS SGREGSLLRR DGAGAPCGKL PSTVRVAAGT 240 ASATRPNAPT VPAEEDNGGD GPSLELSLRP PLPPPTVGGR ANDYDLLTPE TALAWAVLLL 300 CQAGGLTLVD LLHGSRSGTP DVQHPHVRDS CRGGGESGRW LGDVNGGSLS QKMLQSAGAS 360 RRSFSPSPNS RRPLSD*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MMHHHVPTLS NLIVVAKVLA EREVERIPCV QSAESGCPTV SLFLASESCG VREKITEETK  60
EVERQSNWVS VCACVRERER EREEERRREE NRVWRVEGGR GRKGCIRASR GPWVVRRVGR  120
DGVLRTSLRS PSEQERSKNL ARERRRRMVA ARIFASLRAQ GGFPLPKHPD QNDVLKALCQ  180
QAGWHVEEDG TIHRKMHTQW HACEPPAKAS SGREGSLLRR DGAGAPCGKL PSTVRVAAGT  240
ASATRPNAPT VPAEEDNGGD GPSLELSLRP PLPPPTVGGR ANDYDLLTPE TALAWAVLLL  300
CQAGGLTLVD LLHGSRSGTP DVQHPHVRDS CRGGGESGRW LGDVNGGSLS QKMLQSAGAS  360
RRSFSPSPNS RRPLSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	5e-13	102	195	345	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	5e-13	102	195	345	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	5e-13	102	195	345	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	5e-13	102	195	345	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13201	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.3	7e-13	BES1 family protein

Link Out ? help Back to Top
Phytozome	Spipo27G0017700