PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo23G0039200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 110aa MW: 12036.2 Da PI: 7.7373 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.6 | 1.8e-30 | 57 | 106 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+ave+LGG+++AtPk il++m+v gL+++hvkSHLQ Spipo23G0039200 57 PRLRWTPDLHRCFVHAVERLGGQDRATPKLILQMMNVRGLSIAHVKSHLQ 106 9************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 53 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.195 | 53 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-15 | 54 | 106 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-22 | 56 | 106 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-9 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MEETGRSASP EKNPSDEEED GDGNHNNGGS SSNSTVEESE RKGSPGSVRQ YNRSKNPRLR 60 WTPDLHRCFV HAVERLGGQD RATPKLILQM MNVRGLSIAH VKSHLQLSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-18 | 58 | 106 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 58 | 106 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 58 | 106 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 58 | 106 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-18 | 56 | 106 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008806053.2 | 3e-46 | probable transcription factor KAN4 isoform X2 | ||||
Swissprot | Q700D9 | 9e-26 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A1D1YHN5 | 3e-47 | A0A1D1YHN5_9ARAE; Putative Myb family transcription factor At1g14600 | ||||
STRING | XP_008806053.1 | 4e-47 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 1e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo23G0039200 |