PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo23G0001100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | GeBP | ||||||||
Protein Properties | Length: 239aa MW: 26541.4 Da PI: 9.9095 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 99 | 4.3e-31 | 21 | 117 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 fqr+w + Dei+lL+ +++f ++++g++p+ +d fy+f+ + +k+sk+q+++K+rrLKkK++++ +++++g +p+f+k+hd+ +felskk Spipo23G0001100 21 SFQRVWMQVDEIALLKSMVKFqATQNGADPTGALDTFYNFICPTMRVKFSKTQVSDKMRRLKKKYETNHRRSRKGADPAFAKSHDRVSFELSKK 114 69*******************4457899****************************************************************** PP DUF573 95 iWg 97 iW Spipo23G0001100 115 IWA 117 **6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.3E-28 | 22 | 116 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDGAAKSTRT AAAGIVSPAR SFQRVWMQVD EIALLKSMVK FQATQNGADP TGALDTFYNF 60 ICPTMRVKFS KTQVSDKMRR LKKKYETNHR RSRKGADPAF AKSHDRVSFE LSKKIWAPSQ 120 LAVPSPSDDR QDDLVVNTAA AHARDRALMP LVDVGDAGER ARPFLREAIN LLEMYSGNWL 180 SSQLLTSMLE HNPVMSDALD ERCGKHFLAS VNLMLEQGKI KEDLLKCAAD NISSILNR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 3e-21 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Spipo23G0001100 |