PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo21G0020400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 213aa MW: 22762.3 Da PI: 6.355 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.6 | 6.2e-29 | 101 | 157 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYG+K+vk+s++ r+YYrC++ gC vkk+ver+a+d ++v+++Yeg+Hnh Spipo21G0020400 101 EDGYKWRKYGKKSVKSSPNLRNYYRCSTGGCGVKKRVERDADDASYVITVYEGTHNH 157 8******************************************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-30 | 86 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-26 | 92 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.277 | 95 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-31 | 100 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-23 | 101 | 157 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MESDPFSPAS AGASAALEQL LFQVSDHLAF DEGSQPGGSL PLAVAREDES RPLAAANGTD 60 NSIMVEQTSS RMECEGVSKR EKMDSRPRIG FRTMSTIDVL EDGYKWRKYG KKSVKSSPNL 120 RNYYRCSTGG CGVKKRVERD ADDASYVITV YEGTHNHLPP GAVYYPVPLS GQHATMAAGG 180 ATAAAGWGSS SSAMITTPLD PQRWETNGAH LL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-24 | 88 | 161 | 2 | 76 | WRKY transcription factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935281.1 | 2e-48 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1D1YBM4 | 6e-54 | A0A1D1YBM4_9ARAE; Putative WRKY transcription factor 51 (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-37 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo21G0020400 |