PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0094100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 210aa    MW: 22250.3 Da    PI: 7.3585
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0094100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.12.2e-36231231100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf p+  + +fa+vh++FGasn +kll+++p+++r +a+ +++yeA+ar+rdPv G+v+++++lqqq+ +l+ael
  Spipo1G0094100  23 PCGACKFLRRKCVSGCIFAPYFdPEGGAGHFAAVHRVFGASNASKLLQRVPPHRRLHAVLTMCYEAHARLRDPVFGCVAHVFALQQQVVSLEAEL 117
                     7*********************666669******************************************************************* PP

          DUF260  95 allkee 100
                      l++++
  Spipo1G0094100 118 GLVQAR 123
                     999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.64922124IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3623121IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSWNGDAKGG CWGAAAADGG GGPCGACKFL RRKCVSGCIF APYFDPEGGA GHFAAVHRVF  60
GASNASKLLQ RVPPHRRLHA VLTMCYEAHA RLRDPVFGCV AHVFALQQQV VSLEAELGLV  120
QARLSAARSS SCAASLLPNG GFCGGQYTSD SSLVNATLEA TLPPPELDGE RRCVGQPVQQ  180
LENDEVETLV QEYFAKYLQG AKLRWPDSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-36131241111LOB family transfactor Ramosa2.1
5ly0_B1e-36131241111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052037.23e-63PREDICTED: LOB domain-containing protein 31
TrEMBLA0A1D1XNJ13e-68A0A1D1XNJ1_9ARAE; LOB domain-containing protein 30 (Fragment)
STRINGEOX961942e-62(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.15e-45LOB domain-containing protein 18