PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0094000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 235aa MW: 24248.8 Da PI: 8.5045

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0094000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	25	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++f +vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPv+G+v++i++lqqq+ +l+ael Spipo1G0094000 25 PCGACKFLRRKCVTGCIFAPYFGSEQgAANFSAVHKVFGASNVSKLLMHIPATKRLDAVVTICYEAQARLRDPVHGCVSHIFALQQQVVSLQAEL 119 7*********************9989***************************************************************** PP DUF260 95 allkee 100 +ll+++ Spipo1G0094000 120 SLLRAH 125 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.31	24	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-39	25	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSGRGGGALS GGCASGGGTG GGGGPCGACK FLRRKCVTGC IFAPYFGSEQ GAANFSAVHK 60 VFGASNVSKL LMHIPATKRL DAVVTICYEA QARLRDPVHG CVSHIFALQQ QVVSLQAELS 120 LLRAHLATLE LASPPPPPPP PPPPPLPSSP LTIPISELPP ASSLPTSFDL ATLFETPVNL 180 PWPVQQQQQD RQVNRRPFAP AEDPSGGGDL RSLARELVDG QKSAATLPPP AVSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-35	19	132	5	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-35	19	132	5	115	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400358.1	2e-80	PREDICTED: LOB domain-containing protein 18-like
Swissprot	O81323	1e-65	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A444F113	3e-82	A0A444F113_ENSVE; Uncharacterized protein
STRING	GSMUA_Achr5P11330_001	8e-80	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-56	LBD family protein

Link Out ? help Back to Top
Phytozome	Spipo1G0094000

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]