PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo18G0031500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 311aa MW: 33401.5 Da PI: 7.3175

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo18G0031500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96	4.1e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C++lr++C+++C+++p++ +++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q +q Spipo18G0031500 4 SCNGCRILRKGCSESCTIRPCLewikcAESQANATVFLAKFYGRAGLLNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGRWQFCQ 97 6*********************99666889********************************************************** PP DUF260 90 lkaelallk 98 +++e++l++ Spipo18G0031500 98 AAVEAVLRG 106 *998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.624	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MRVSCNGCRI LRKGCSESCT IRPCLEWIKC AESQANATVF LAKFYGRAGL LNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GRWQFCQAAV EAVLRGGPIM QVPADFDSRS 120 QAAFLQRVSS YDIRHVSKAA AGGTSAFDPK KVNKATRARF KRSGNRVLEV LSEPVADSTG 180 FQWCHPAEYW REPSKDSASG AVEVLLVPAE AAGGESRENE SILSLETVEA STVASQSDVE 240 LELTLGYESV QQHHSPFRGS SSSSSSGSFG RRAEDSPTRA EAASERCPRG AFDGASVGSD 300 RMDLGLDLSA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799243.1	2e-91	LOB domain-containing protein 41
TrEMBL	A0A2H3YIS0	4e-90	A0A2H3YIS0_PHODC; LOB domain-containing protein 41
STRING	XP_008799243.1	7e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-76	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Spipo18G0031500