PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0027600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 281aa    MW: 30058.8 Da    PI: 7.6093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0027600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10196239755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ ++RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Spipo18G0027600 196 IAAKNRRERISERLKILQDLVPNG-----TKVDLVTMLEKAISYVKFLQ 239
                      5679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-12189246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.377189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-12191243No hitNo description
SuperFamilySSF474591.57E-13192250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7197239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDHSSGSRAD FPPGPAPPSP LHFSYHYRGC TNAAATAVKL QDSAILAQPP LNHPPSRLSS  60
PSNCTGGLLA LGSHSILSFK ALSESSSSNS SMLSFEQENL KAPHHRNAPA AAGGGDQEMN  120
CFEISSCYEQ VVEAVKESQR EEEFGWFCSE EMIGGDGALQ KRPKSGAEGM GSKRHCASTH  180
NKSKSKLTAS KDPQSIAAKN RRERISERLK ILQDLVPNGT KVDLVTMLEK AISYVKFLQL  240
QVKVLATDEF WPPHGGKAPE LAQVKEAIDA ILAAHNGSPS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882917.12e-60putative transcription factor bHLH086 isoform X2
TrEMBLA0A2R6R5858e-59A0A2R6R585_ACTCH; Transcription factor bHLH83 like
STRINGAquca_041_00164.13e-57(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-51RHD SIX-LIKE 1