PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo18G0018800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

BES1

Protein Properties

Length: 264aa MW: 27671 Da PI: 9.1261

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo18G0018800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	181.8	3e-56	3	130	2	131
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 ++ r ptwkErEnnkrRERrRRaiaakiy GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ +a+ +sas sp+ss+ Spipo18G0018800 3 SGSRLPTWKERENNKRRERRRRAIAAKIYWGLRMYGNYNLPKHCDNNEVLKALCAEAGWTVEADGTTYRKGCKPT--GNAVACSASPSPCSSSY 94 789**********************************************************************..99999*****99876 PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsisla 131 s+ s + + ++s + +++ s+ s+ss+ + +a Spipo18G0018800 95 qPSPAS-SYDADANSLIPWLRNLSSASSSSSAAAASA 130 244444.444555555555555544444444444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.4E-53	4	127	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MTSGSRLPTW KERENNKRRE RRRRAIAAKI YWGLRMYGNY NLPKHCDNNE VLKALCAEAG 60 WTVEADGTTY RKGCKPTGNA VACSASPSPC SSSYQPSPAS SYDADANSLI PWLRNLSSAS 120 SSSSAAAASA RAALRHHLFI HGGSVSAPVT PPISSPTARS PRMKMEWDCP SAPAPRAAPP 180 GGGGGPSCPT FSLVSSNNPF RFFGGGGATP RGGADVAMAE AVGEEFAFGG GGLGVVKAWE 240 GERIHAECLA EDLELTLGNS RTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	7e-25	6	86	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	7e-25	6	86	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	7e-25	6	86	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	7e-25	6	86	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449559.1	2e-87	BES1/BZR1 homolog protein 4 isoform X1
Refseq	XP_006467592.1	2e-87	BES1/BZR1 homolog protein 4 isoform X1
Refseq	XP_006467593.1	2e-87	BES1/BZR1 homolog protein 4 isoform X2
Refseq	XP_024047538.1	2e-87	BES1/BZR1 homolog protein 4 isoform X1
Refseq	XP_024047539.1	2e-87	BES1/BZR1 homolog protein 4 isoform X2
Refseq	XP_028056898.1	2e-87	BES1/BZR1 homolog protein 4-like isoform X1
Refseq	XP_028056899.1	2e-87	BES1/BZR1 homolog protein 4-like isoform X2
Swissprot	Q5Z9E5	4e-70	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A1D1YRS8	9e-88	A0A1D1YRS8_9ARAE; BES1/BZR1 4 (Fragment)
STRING	XP_006467592.1	7e-87	(Citrus sinensis)
STRING	XP_006449559.1	7e-87	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-40	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Spipo18G0018800

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]