PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo17G0022400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 273aa MW: 28352 Da PI: 8.4194

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo17G0022400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ++Fs+ L H+r+H Spipo17G0022400 5 HTCKLCWRHFSSGRALGGHMRSH 27 79********************9 PP
2	zf-C2H2	12.5	0.00043	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+F+++ L H +H Spipo17G0022400 189 HSCRTCGKVFRSHQALGGHRASH 211 79**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.203	5	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.7E-8	5	27	No hit	No description
Pfam	PF13912	2.7E-6	5	29	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	5	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.7E-8	184	211	No hit	No description
Pfam	PF13912	4.6E-8	189	213	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	189	211	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.679	189	216	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	191	211	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MTSKHTCKLC WRHFSSGRAL GGHMRSHAKP YIIAAAAVGS AALPSSSSSA THGGDRRPKQ 60 PVSGDGLQEK RKRSWRLTDP ELSSAVLGAA AASSSVVLPD WESDTESSKP PPPQKPGELE 120 PEPASSVSDT TPEEDVALCL VMLSRDAWCS VAAVAAAAAA AGVVEEVEMA ESKPAPRVRS 180 RTGGGRRKHS CRTCGKVFRS HQALGGHRAS HKQPRSCAAA PPPPPPYPTG ISGEEDTSPA 240 IIHECSVASV GGAPAAPAWR ITIDLNMPPP MD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	7e-17	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Spipo17G0022400