PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0025000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WOX | ||||||||
Protein Properties | Length: 165aa MW: 18750.4 Da PI: 10.2952 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 9.6e-21 | 80 | 140 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql +Le+ F++ n ps+++ +e+A++l +++e++V++WFqNrRa+ k+ Spipo16G0025000 80 RQRWSPTPGQLLVLESIFNQgNVAPSKQKVKEIASELasrgQISETNVYNWFQNRRARLKR 140 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 88.7 | 5.9e-29 | 79 | 141 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp Q+ +Le+++++G + P+k+++++i++eL++ G+i+++NV++WFQNr+aR +++ Spipo16G0025000 79 SRQRWSPTPGQLLVLESIFNQGNVAPSKQKVKEIASELASRGQISETNVYNWFQNRRARLKRR 141 689********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 73 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.467 | 76 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-18 | 78 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-11 | 78 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.46E-12 | 80 | 142 | No hit | No description |
Pfam | PF00046 | 1.9E-18 | 80 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MAEGVFHFRV MTDEQMEVLR KQISVYATIC QQLVEMHKAI YALPVDYSLL AVHVSISGTC 60 PRNPHYDSSA APGGHKMASR QRWSPTPGQL LVLESIFNQG NVAPSKQKVK EIASELASRG 120 QISETNVYNW FQNRRARLKR RHPTAMRSNV ESEVETQRKE QRNR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940220.2 | 1e-58 | WUSCHEL-related homeobox 8 isoform X2 | ||||
Swissprot | Q5QMM3 | 2e-53 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2H3ZE14 | 1e-56 | A0A2H3ZE14_PHODC; WUSCHEL-related homeobox 8-like | ||||
STRING | XP_008812362.1 | 2e-57 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-45 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0025000 |
Publications ? help Back to Top | |||
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