PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0005800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 24287.6 Da PI: 6.8759 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 4.8e-39 | 32 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf + q +++f +vhk+FGasnv+kll+ +p+ +r da+ +++yeA+ r+rdPvyG+vg il+lqqq+++l+ae Spipo16G0005800 32 PCGACKFLRRKCVSGCIFAPYFNSVQgAAHFSAVHKVFGASNVSKLLRLIPPYKRLDAVVTICYEAQLRIRDPVYGCVGRILALQQQVANLQAE 125 7***********************9879****************************************************************** PP DUF260 94 lallkee 100 l+ l+++ Spipo16G0005800 126 LSCLQTH 132 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.206 | 31 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-39 | 32 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
SVGIGSPPCG SGSGGGGGGG GGVGGGGGGG GPCGACKFLR RKCVSGCIFA PYFNSVQGAA 60 HFSAVHKVFG ASNVSKLLRL IPPYKRLDAV VTICYEAQLR IRDPVYGCVG RILALQQQVA 120 NLQAELSCLQ THLAPQEPPP VTHAPPSQAS PAAFFTPELP LASLLPGTFD LSTLFDPPLL 180 LPWPPPLQQQ QLDLRQLGRN GGGELTDNNQ DGGDMQDLAR ELMERYSSAS AEQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-38 | 28 | 133 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-38 | 28 | 133 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010276364.1 | 5e-75 | PREDICTED: LOB domain-containing protein 30-like | ||||
Swissprot | O81323 | 7e-57 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A1U8BHE7 | 1e-73 | A0A1U8BHE7_NELNU; LOB domain-containing protein 30-like | ||||
STRING | XP_010276364.1 | 2e-74 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 2e-45 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0005800 |
Publications ? help Back to Top | |||
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