PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0014800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 399aa    MW: 42096 Da    PI: 4.395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0014800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13258303555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++YIk Lq
  Spipo10G0014800 258 HSIAERLRRERIAERMKALQELVPNP-----NKTDKASMLDEIIDYIKFLQ 303
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.95E-14251307No hitNo description
SuperFamilySSF474597.72E-18251313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.822253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17254314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10258303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-14259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MQHEEGETGP VMATAVEPSS EVQNGPPRME NSDLKQVDRP SSSSQEDLFD QMLSGIAWEE  60
VNRGSVKPPW EPAGADGGGG SDSDGQKIFG LSSAWGEQWT SAEELQYLAS HGEPGVMPSE  120
LQELGIIGGG SSTPSEIPRD FQRSNDYEQQ CMLLPATAKS VATGDLGFLP LPPSHGGSGS  180
ADSRLLAGRS RDDDADLCFR SPNPSLYDGF SGSLQQEIQT AARIHQVLPT PPPQNGGAPA  240
APPRQRVRAK RGQATDPHSI AERLRRERIA ERMKALQELV PNPNKTDKAS MLDEIIDYIK  300
FLQLQVKVMS MSRLGVTAAA AAAAADAPPP SEVTAAAGGE DLAAAEQVVA ELMGEDLGTA  360
MKFLQARGLC LMPISLATTL PEPTAAMLTA HPAANSDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929150.12e-82uncharacterized protein LOC105050721 isoform X2
TrEMBLA0A1D1Z5C75e-93A0A1D1Z5C7_9ARAE; Transcription factor bHLH66 (Fragment)
STRINGXP_010275766.14e-72(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.18e-38LJRHL1-like 2