PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0178700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 221aa    MW: 23873.1 Da    PI: 6.7911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0178700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-124894354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++h e+ErrRR+ri+  +++Lr++l  +      K++Ka+ L kAve++++L
  Spipo0G0178700 48 VNHREAERRRRERIKLHLDRLRSILACD-----AKVEKASLLAKAVEHVRDL 94
                    68*************************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.244594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-104894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1248114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1349113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-851100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.98E-7136201No hitNo description
Gene3DG3DSA:3.30.70.2601.3E-7136200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAEGRQPHHF GLCESLETPS FFPSSFPPEM SEMGEDEQLQ DRALAATVNH REAERRRRER  60
IKLHLDRLRS ILACDAKVEK ASLLAKAVEH VRDLKQRAAE VGDMDDRLPS ESDEVSVHAA  120
EDGGGGGGRR PILKASLCCE DRSGLLPELA ETLKSLSLRL LRAEISTIGG RIRNVLVVAA  180
EDGGAPAAFL ADALKALADG TGGMDRSKRR RLLGRSATMG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358ERRRRE
2207211KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271836.13e-62PREDICTED: transcription factor bHLH106-like
SwissprotQ9LET04e-49BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A1D1YUW51e-75A0A1D1YUW5_9ARAE; Putative transcription factor bHLH107
STRINGEOY088099e-61(Theobroma cacao)
STRINGXP_010271836.11e-61(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]