PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0154500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 308aa    MW: 33278 Da    PI: 8.584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0154500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12141188355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++ErrRR+++ ++f  L  ++P +     kK++Ka++L  Av Y+k+Lq
  Spipo0G0154500 141 KDHTIAERRRREKLSQRFIALSAMVPGL-----KKMDKASVLGDAVSYVKKLQ 188
                     67**************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.196138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-13139192No hitNo description
SuperFamilySSF474599.55E-17141200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17142199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-15144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELSPVPWRF DQGFHDPGFV DQCDQIPPLC ELISEEQMAA ALGNDFCDSL SPESRASYST  60
LAPEERPAKL LKTGCWSSSD AARRRVLSFA GVGGGGGAAA VTVKPEEEVV GFSVSVGSDS  120
SYETVKGKRS NSGRRSPTRS KDHTIAERRR REKLSQRFIA LSAMVPGLKK MDKASVLGDA  180
VSYVKKLQER VKTLEDQAAK RTVESTVPLK NSRPGADGGR SSADGNFEGP AMAGGLPEID  240
AVVSERRVLV RIHCERRRGA LLKVLGEMEK LHLSILNTSV IPFAGSSFYI TVMAQASLLY  300
LLILCFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14133191257Transcription factor MYC2
5gnj_B2e-14133191257Transcription factor MYC2
5gnj_E2e-14133191257Transcription factor MYC2
5gnj_F2e-14133191257Transcription factor MYC2
5gnj_G2e-14133191257Transcription factor MYC2
5gnj_I2e-14133191257Transcription factor MYC2
5gnj_M2e-14133191257Transcription factor MYC2
5gnj_N2e-14133191257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138150RSKDHTIAERRRR
2146151ERRRRE
3147152RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411335.12e-82PREDICTED: transcription factor bHLH18-like isoform X2
RefseqXP_018684175.13e-82PREDICTED: transcription factor bHLH18-like isoform X1
RefseqXP_018684176.12e-82PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBLA0A1D1YQ131e-86A0A1D1YQ13_9ARAE; Transcription factor bHLH25
STRINGGSMUA_Achr7P27600_0011e-81(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-47bHLH family protein