PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0141700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 486aa    MW: 51597.5 Da    PI: 7.3968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0141700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13299344454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N +f  Lr+++P+       +++Ka+ L  Av YIk+L
  Spipo0G0141700 299 NHVEAERQRREKLNLRFYALRSVVPNV-----SRMDKASLLADAVSYIKEL 344
                     799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-4036216IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-18295362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.155295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-14298349No hitNo description
PfamPF000103.9E-10299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17299361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-16301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEELISPTSS PNPQPPPPPQ LFSTTSFLPL SPLLTLKHRL QYLLQTLPEW WAYAIFWRAS  60
SSDHHPRTTI YDPRTVLSWG DGHLRGNGGG NSSSGNSFLL NPERKKVSLL SDDNNSDITT  120
DGVVSDVEWF YLVSQARSFA VAADHAVPTR AFASGSHVWL SGGHELQMYG CERCREALLH  180
GVATLVCIPA GNGVLELGSP EMVGDNWGLV QQVKALLSVG LDLDLGGGGG GGGGGGVTTV  240
VPSASATVMP KALKDGVPVG LTSSLESEHS DSEGGLLLER RRPKKRGRKP GSGKEVPVNH  300
VEAERQRREK LNLRFYALRS VVPNVSRMDK ASLLADAVSY IKELRSRVEE LEAEAKKPKN  360
EALKVTATAN APRPTVVRTG KAAAAAGGGG GGGGGGAGGG GAVDKMEFDV RMMEADAVIR  420
VKSENLSHPS ARLMSALREL DMQVQHASIS CVKEFMLQDV VARAPPGLES EDTLKAALLA  480
QLERS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-27352198194Transcription factor MYC3
4rqw_B2e-27352198194Transcription factor MYC3
4rs9_A2e-27352198194Transcription factor MYC3
4yz6_A2e-27352198194Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280288RRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909816.11e-138transcription factor MYC2
TrEMBLA0A1D1XP170.0A0A1D1XP17_9ARAE; Transcription factor bHLH14
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.19e-40bHLH family protein