PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0122500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 240aa    MW: 25583.7 Da    PI: 9.1347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0122500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-1860114256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Spipo0G0122500  60 RKKLRLSKEQSAYLEESFREHNTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 114
                     778899***********************************************98 PP
2HD-ZIP_I/II128.82.3e-4160150192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq++ LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk
  Spipo0G0122500  60 RKKLRLSKEQSAYLEESFREHNTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKSCCERLTEENRRLHKELQELR-ALK 150
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-1847110IPR009057Homeodomain-like
SuperFamilySSF466896.84E-1952117IPR009057Homeodomain-like
PROSITE profilePS5007117.13556116IPR001356Homeobox domain
SMARTSM003891.0E-1558120IPR001356Homeobox domain
CDDcd000863.34E-1560117No hitNo description
PfamPF000462.1E-1560114IPR001356Homeobox domain
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PfamPF021834.8E-11116150IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.7E-24116159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEAAALVAVS SSPNSAVSSF QVDLSGAIAG SGGGGSRNDS GDADRACSRA SDEEENGPTR  60
KKLRLSKEQS AYLEESFREH NTLNPKQKVA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV  120
DCEYLKSCCE RLTEENRRLH KELQELRALK TSHPFYMQLP ATTLTMCPSC ERVATASTAA  180
CSSSAAAGGR SATVPAGGAA GKPLSSFDLR PSLPMLTTPR SVSAPQQHPP AAAHQSAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15864TRKKLRL
2108116RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265939.17e-99PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466654e-83HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8AS992e-97A0A1U8AS99_NELNU; homeobox-leucine zipper protein HOX11-like
STRINGXP_010265939.13e-98(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-76homeobox from Arabidopsis thaliana